Editorial: Sequencing and phylogenetic analysis as a tool in molecular epidemiology of veterinary infectious diseases, Volume II

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Over the past decade, rapid advances in sequencing technologies have transformed molecular epidemiology from a confirmatory discipline into a proactive framework for real-time pathogen tracking and evolutionary insight. Volume II of this Research Topic builds upon the foundation of the first collection, emphasizing how the continuous improvement of sequencing technologies and bioinformatic analysis enables more accurate detection, classification, and monitoring of a broad spectrum of veterinary pathogens. The 14 contributions encompass poultry, swine, cattle, small ruminants, companion animals, and wildlife, demonstrating that genomics underpins outbreak investigation, routine surveillance, and discovery of hidden pathogen diversity. Together, they illustrate how high-throughput sequencing, longread platforms, and integrative phylogenetic pipelines are now essential tools for modern disease control in animal populations.

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