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bioSyntax: syntax highlighting for computational biology

Article scientifique 2018 Anglais

Résumé

BACKGROUND: Computational biology requires the reading and comprehension of biological data files. Plain-text formats such as SAM, VCF, GTF, PDB and FASTA, often contain critical information which is obfuscated by the data structure complexity. RESULTS: bioSyntax ( https://biosyntax.org/ ) is a freely available suite of biological syntax highlighting packages for vim, gedit, Sublime, VSCode, and less. bioSyntax improves the legibility of low-level biological data in the bioinformatics workspace. CONCLUSION: bioSyntax supports computational scientists in parsing and comprehending their data efficiently and thus can accelerate research output.

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Babaian, A., Ebou, A., Fegen, A., Kam, J., Novakovsky, G., Wong, J., Aïssi, D., Li, Y. (2018). bioSyntax: syntax highlighting for computational biology. https://doi.org/10.1186/s12859-018-2315-y

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Auteur(s)

Artem Babaian Anicet Ebou Alyssa Fegen Jeffrey Kam Gherman Novakovsky Jasper Wong Dylan Aïssi Yao Li

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